Teaching

Current / Upcoming Courses

• Writing in Computer Science, CSE 597-3, Fall 2021
• List of other bioinformatics and computational biology courses at PSU

Select Educational Materials

• Videos on writing in computer science
  • YouTube playlist, Slides on writing an intro
• Modeling Biological Problems in Computer Science: A Case Study in Genome Assembly
  • Paper, Slides
• Bidirected de Bruijn graphs (in bcalm2)
  • GitHub / blog post
• What do Eulerian and Hamiltonian cycles have to do with genome assembly?
  • Blog post

Select Previous Courses

• Algorithms and Data Structures in Bioinformatics, CSE / BMMB 566, Spring 2021, Spring 2019, Spring 2018, Spring 2017, Spring 2016, Spring 2015, Spring 2014,  Spring 2013.
• Data Structures and Algorithms, CMPSC465, Spring 2023, Fall 2022, Spring 2021, Fall 2017, Fall 2015, Spring 2014.