Teaching

Current / Upcoming Courses

• Algorithms and Data Structures in Bioinformatics, CSE / BMMB 566, Spring 2021.
• Data Structures and Algorithms, CMPSC465, Spring 2021
• List of other bioinformatics and computational biology courses at PSU

Select Educational Materials

• Modeling Biological Problems in Computer Science: A Case Study in Genome Assembly
  • Paper
  • Slides
• Bidirected de Bruijn graphs (in bcalm2)
• What do Eulerian and Hamiltonian cycles have to do with genome assembly? (written with Mihai Pop)

Selected Previous Courses

• Algorithms and Data Structures in Bioinformatics, CSE / BMMB 566, Spring 2019, Spring 2018, Spring 2017.
• Algorithms and Data Structures in Bioinformatics, CSE597A/CSE597C/BMMB598F, Spring 2016, Spring 2015, Spring 2014.
• Data Structures and Algorithms, CMPSC465, Fall 2017, Fall 2015, Spring 2014.
• Algorithms and Data Structures in Bioinformatics, CSE598C / BMMB598F, Spring 2013.