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A Research Group in Algorithmic Bioinformatics

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Author: paulmedv

What do Eulerian and Hamiltonian cycles have to do with genome assembly?

Posted onAugust 21, 2020August 28, 20205 Comments

(written by Paul Medvedev and Mihai Pop) When you learned about genome assembly algorithms, you might have heard a story that goes something like this: In the overlap-layout paradigm, solving the assembly problem requires solving the Hamiltonian cycle problem in Read More

Algorithm Engineering / Experimental Algorithms

Posted onApril 1, 2020April 1, 2020Leave a comment

If you know me personally, then you know how often I complain about the gap between theory and practice in bioinformatics. Recently, I came across a research area that seeks to address this gap, though not in bioinformatics specifically. It Read More

My Twitter guidelines

Posted onFebruary 25, 2020February 25, 20202 Comments

I was recently asked about my attitude towards Twitter, which inspired me to write a blog post about it. It took me awhile to start using Twitter, and then only as a passive observer. On the one hand, the format Read More

What are some common issues I find when reviewing algorithmic bioinformatics conference papers?

Posted onAugust 11, 2019April 6, 2020Leave a comment

UPDATE: This post, in a slightly modified and improved form, is now published at https://doi.org/10.1371/journal.pcbi.1007742 . Please see there for the latest version. As a PC member, I sometimes find it frustrating to see a paper that potentially has a Read More

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Dr. Paul Medvedev
506 Wartik Lab
University Park, PA 16802

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